Publications

• 2022: Sabine Keuter, Hanna Koch, Katharina Sass, Simone Wegen, Natuschka Lee, Sebastian Lücker, Eva Spieck. 2022. Some like it cold: the cellular organization and physiological limits of cold-tolerant nitrite-oxidizing Nitrotoga. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15958

• 2021: Schneider M., Bäumler, M., Lee N., Weuster-Botz D., Ehrenreich A., Liebl W. 2021. Monitoring co-cultures of Clostridium carboxidivorans and Clostridium kluyveri by fluorescence in situ hybridization with specific 23S rRNA oligonucleotide probes. Systematic and Applied Microbiology., 44, 6, 126271. 

• 2020: Whole Cell Identification of Microorganisms in Their Natural Environment with Fluorescence in situ Hybridization (FISH)

• 2016: Rapid Microscope Based Identification Method for Tuberculosis and Other Mycobacteria: Fluorescence In Situ Hybridization (FISH) - Current State of The Art and Future Research Needs

Examples of former publications around FISH

• Lee, N. M., Meisinger, D. B., Schmid, M., Rothballer and F. E. Löffler. 2011. Fluorescence in situ hybridization in geomicrobiology. In: Encyclopedia in Geobiology. Eds H.J. Reitner and V. Thiel. Springer Verlag, pp 854-880. The current online version contains a few errors and lacks partly figure text.
• Engel, S. A., Meisinger, D. B., Porter, M. L, M. Schmid, Stern, L. A., K. H. Schleifer and N. M. Lee. 2010. Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA). ISME Journal 4, 98–110.
• Pavlekovic, M., Schmid, M. C., Schmider,-Poignee N., Spring, C., Pilhofer, M., Gaul , T., Fiandaca, M., Loeffler, F. E., Jetten, M., K.-H. Schleifer and N. M. Lee. 2009. Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment. Journal of Microbiological Methods 78:119-126.
• Pilhofer, M., Pavlekovic, M., Lee, N., W. Ludwig, W. and K. H. Schleifer. 2009. Concomitant identification of diazotrophic bacteria and detection of nifH mRNA by using fluorescence in situ hybridization. Systematic Applied Microbiology 32: 186-192.
• Dalhammar, G., Lee, N. M. and A. Norström. 2008. The microbial characterization of a hydroponic treatment step for domestic wastewater - towards an expanded view on the plant-microbial hydroecology. Journal of Environmental Engineering and Science 7(6): 635-644.
• Meisinger, D. B., Zimmermann, J., Ludwig, W., Schleifer, K. H., Wanner, G., Schmid, M., Bennett, P. C., A. S. Engel and N. M. Lee. 2007. In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically-based cave system (Lower Kane Cave, WY, USA). Environmental Microbiology, vol 9(6): 1523-1534.
• Schmid, S., Selesi, D., Rothballer, M., Schloter, M., Lee, N. M., E. Kandeler, and A. Hartmann. 2006. Localization and Visualisation of Microbial Community Structure and Activity in Soil Microhabitats. In Soil Biology, vol 6. Eds. König, H. and Varma, A. Berlin: Springer Verlag 439-461.
• Rossello-Mora, R., Lee, N. M., J. Anton and M. Wagner. 2003. Substrate uptake in extremely halophilic microbial communities revealed by microautoradiography and fluorescence in situ hybridization. Extremophiles 7, 409.
• Engel, A. S., Lee, N. M., Porter, M. L., Stern, L. A., P. C. Bennett and M. Wagner. 2003. Filamentous Epsilonproteobacteria dominate microbial mats from sulfidic cave springs. Appl Environ Microbiol 69, 5503.
• Loy, A., Lehner, A., Lee, N. M., Adamczyk, J., Meier, H., Ernst, J., K.H. Schleifer and M.Wagner. 2002. An oligo-nucleotide microarray for 16S rRNA gene based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol., 68, 5064.
• Lee, N. M., Nielsen, P. H., Andreasen, K., Juretschko, S., Nielsen, J. L., K.H. Schleifer and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiography – a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65, 1289.