Latest publications

The research performed at Plant Physiology is peer-reviewed and published in international scientific journals. Publications together with Doctoral and Licentiate thesis from the department, that are present in DiVA (Digitala vetenskapliga arkivet) are listed below.

Latest publications

A comparative analysis of receptor-like kinases in Chlorophyta reveals the presence of putative cell wall integrity sensors

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (1)

Marcianò, Demetrio; Dauphin, Bastien G.; Basso, Fabian; et al.

A pangenome insight into the genome divergence and flower color diversity among Rhododendron species

BMC Genomics, BioMed Central (BMC) 2026, Vol. 27, (1)

Ma, Hai-Yao; Nie, Shuai; Liu, Hai-Bo; et al.

An updated perspective: what genes make a tree a tree?

Trends in Plant Science, Elsevier 2026, Vol. 31, (1) : 20-31

Birkeland, Siri; Soldado, Eduardo R.; Ranade, Sonali Sachin; et al.

Associations between volatile fatty acid profiles, methane emissions, and rumen microbiota in sheep fed Ethiopian forage

Frontiers in Microbiology, Frontiers Media S.A. 2026, Vol. 16

Bekele, Wondimagegne; Mahawar, Lovely; Ramin, Mohammad; et al.

Comparative co-expression network analysis of abiotic stress response in boreal conifers

Umeå: Umeå University 2026

van Zalen, Elena

Consistent species richness patterns but not richness estimates based on both ASV and OTU inference methods onITS2-based soil fungal communities

Environmental DNA, John Wiley & Sons 2026, Vol. 8, (1)

Kyaschenko, Julia; Tångrot, Jeanette; Dahlberg, Anders; et al.

Integrating parental breeding value, genetic gain, and gamete contribution for elite family selection in Platycladus orientalis

Journal of Forestry Research, Springer Nature 2026, Vol. 37, (1)

Jiao, Si-Qian; Li, Meiyu; Li, Zhi-Chao; et al.

L-glutamine modulates root architecture and hormonal balance in Arabidopsis

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (1)

Pařízková, Barbora; Johansson, Annika I.; Juvany, Marta; et al.

Microproteins: uncovering hidden layers of the proteome

Microproteins: methods and protocols, Springer Nature 2026 : 3-18

Shankar, Naveen; Wenkel, Stephan

Preface

Microproteins: methods and protocols, Springer Nature 2026 : v-v

Wenkel, Stephan

Spatiotemporal dynamics of age-related genes and the regulatory network of LaAGL2-3 in Larix kaempferi (Lamb.) Carr. based on the latest genome annotation

BMC Plant Biology, BioMed Central (BMC) 2026, Vol. 26, (1)

Liao, Tang-Quan; Luo, Ao-Jie; Ye, Zha-Long; et al.

Transcriptomic analysis of two wheat genotypes in the presence of the pathogen Zymoseptoria tritici and the biological control agent Clonostachys rosea

Physiological and molecular plant pathology, Elsevier 2026, Vol. 141

Chaudhary, Sidhant; Piombo, Edoardo; Dubey, Mukesh; et al.

What makes a tree a tree?: regulatory network controlling wood formation in coniferous and angiosperm forest tree species

Umeå: Umeå University 2026

Soldado, Eduardo R.

A metabolomics and transcriptomics resource for identifying candidate genes in the biosynthesis of specialised metabolites in Populus tremula

Physiologia Plantarum, John Wiley & Sons 2025, Vol. 177, (5)

Rydman, Sara M.; Lihavainen, Jenna; Robinson, Kathryn M.; et al.

A systems genetics approach to identify candidate genes driving salicinoid diversity in Populus tremula

Umeå: Umeå University 2025

Rydman, Sara

Adaptive and biochemical responses of Dictyosphaerium sp. AM-2024a to environmental conditions and microplastic interactions: synergy of biofuel production with pollution mitigation

Biotechnology and applied biochemistry

Iqbal, Khushboo; Mishra, Arti; Sreedharan, Smitha Mony

Adenylate-driven equilibration of both ribo- and deoxyribonucleotides is under magnesium control: quantification of the Mg2+-signal

Journal of plant physiology (Print), Elsevier 2025, Vol. 304

Kleczkowski, Leszek A.; Igamberdiev, Abir U.

Airborne eDNA captures three decades of ecosystem biodiversity

Nature Communications, Springer Nature 2025, Vol. 16, (1)

Sullivan, Alexis R.; Karlsson, Edvin; Svensson, Daniel; et al.

An evo-devo resource for wood: comparative regulomics across dicot and conifer trees

Rodriguez, Eduardo; Birkeland, Siri; Chapple, Ellen; et al.

Assessment of the impact of biodegradable lignin nanoparticles encapsulating IAA on tomato development: from seed to fruit

BMC Plant Biology, BioMed Central (BMC) 2025, Vol. 25, (1)

Faleiro, Rodrigo; Tessmer, Magda Andreia; Santo Pereira, Anderson Espirito; et al.

Biodiversity genomics research practices require harmonising to meet stakeholder needs in conservation

Molecular Ecology, John Wiley & Sons 2025, Vol. 34, (23)

Buzan, Elena; de Guttry, Christian; Bortoluzzi, Chiara; et al.

Broken Sm-ring: a quest to the source of the cold sensitivity of the A. thaliana SmE1 splicing mutant

Umeå: Umeå University 2025

Dikaya, Varvara

Carbon and nitrogen signaling regulate FLOWERING LOCUS C and impact flowering time in Arabidopsis

Plant Physiology, Oxford University Press 2025, Vol. 197, (1)

Gramma, Vladislav; Olas, Justyna Jadwiga; Zacharaki, Vasiliki; et al.

Comparative study of the mitochondrial proteome from mesophyll, vascular, and guard cells in response to carbon starvation

Physiologia Plantarum, John Wiley & Sons 2025, Vol. 177, (5)

Boussardon, Clément; Hussain, Shah; Keech, Olivier

Comparing methods collecting mucosal secretions and detecting SARS-CoV-2 spike IgA in three laboratories across three countries

Vaccine, Elsevier 2025, Vol. 65

Bladh, Oscar; Aguilera, Katherina; Sheikh-Mohamed, Salma; et al.

Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex traits

G3: Genes, Genomes, Genetics, Oxford University Press 2025, Vol. 15, (9) : 1-10

Lei, Mengyu; Si, Huan; Zhu, Mingjia; et al.

Consistent energy-diversity relationships in terrestrial vertebrates

Science, American Association for the Advancement of Science (AAAS) 2025, Vol. 389, (6755) : 53-57

Coelho, Marco Tulio P.; Barreto, Elisa; Diniz-Filho, Jose Alexandre F.; et al.

Convergent antisense transcription primes hosting genes for stress responsiveness in plants

Molecular Plant, Elsevier 2025, Vol. 18, (11) : 1920-1931

Zacharaki, Vasiliki; Quevedo, Marti; Muniz Nardeli, Sarah; et al.

Data-driven resources and computational tools in non-model plant species

Physiologia Plantarum, John Wiley & Sons 2025, Vol. 177, (1)

Street, Nathaniel

Decoding lignin in Swedish aspen: paths to better feedstocks and resilient trees

Umeå: Umeå University 2025

Luomaranta, Mikko

EasyOmics: A graphical interface for population-scale omics data association, integration, and visualization

Plant Communications, Elsevier 2025, Vol. 6, (5)

Han, Yu; Du, Qiao; Dai, Yifei; et al.

Ecophysiological transition mediated by hybridization in a hybrid pine species complex

Plant Diversity, Elsevier 2025, Vol. 47, (4) : 604-619

Li, Zhi-Chao; Xu, Chao-Qun; Zhao, Wei; et al.

Editorial: The dynamic plant cell wall: sensing, remodelling, and integrity

Frontiers in Plant Science, Frontiers Media S.A. 2025, Vol. 16

Bacete, Laura

Exploring the world of small proteins in plant biology and bioengineering

Trends in Genetics, Cell Press 2025, Vol. 41, (2) : 170-180

Petri, Louise; Van Humbeeck, Anne; Niu, Huanying; et al.

Extracellular ATP is an environmental cue in bacteria

Cell Reports, Elsevier 2025, Vol. 44, (10)

Tronnet, Sophie; Pandey, Vikash; Lloret-Berrocal, Miriam; et al.

Freshwater phytoplankton: the significant ecosystems services provider in aquatic environment

Green equilibrium: deciphering Earth's ecosystems for sustainable tomorrow, Singapore: Springer Nature 2025 : 179-196

Updhyay, Divya; Shukla, Kartikeya; Mishra, Arti; et al.

Genome and transcriptome analysis provide insights into the genetics and breeding of Salix suchowensis growth traits

New forests, Springer 2025, Vol. 56, (6)

Liu, Wei; Gu, Shaobo; Zhu, Mingjia; et al.

Genomic insights into the evolution of Chinese sweetgum and its autumn leaf coloration

Plant Physiology, Oxford University Press 2025, Vol. 198, (2)

Liu, Ping-Li; Jing, Zhao-Yang; Zhang, Ren-Gang; et al.

Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution

New Phytologist, John Wiley & Sons 2025, Vol. 247, (6) : 2964-2981

Zervakis, Panagiotis-Ioannis; Postel, Zoé; Losvik, Aleksandra; et al.

Glucuronoyl esterase of pathogenic Phanerochaete carnosa induces immune responses in aspen independently of its enzymatic activity

Plant Biotechnology Journal

Donev, Evgeniy N.; Derba-Maceluch, Marta; Liu, Xiao‐Kun; et al.

Glycoalkaloid-free starch potatoes generated by CRISPR/Cas9-mediated mutations of genes in the glycoalkaloid biosynthesis pathway enable more sustainable uses of by-products from starch production

Plant Biotechnology Journal

Liu, Ying; Merino, Irene; Gutensohn, Mareike; et al.

Impact of pesticides on soil health of agroecosystems and plant nutrition: challenges and sustainable management

Soil health and nutrition management, CABI Publishing 2025 : 79-116

Navshree, Jiya; Wadhwa, Nikita; Bhatia, Manika; et al.

Incorporating genetic load contributes to predicting Arabidopsis thaliana’s response to climate change

Nature Communications, Springer Nature 2025, Vol. 16, (1)

Jiang, Juan; Chen, Jia-Fu; Li, Xin-Tong; et al.

Independent evolution of betulin biosynthesis in Inonotus obliquus

Scientific Reports, Springer Nature 2025, Vol. 15, (1)

Safronov, Omid; Bal, Güleycan Lutfullahoglu; Sipari, Nina; et al.

Integration of mitoflash and time-series transcriptomics facilitates energy dynamics tracking and substrate supply analysis of floral thermogenesis in Lotus

Plant, Cell and Environment, John Wiley & Sons 2025, Vol. 48, (1) : 893-906

Yu, Miao; Wang, Siqin; Gu, Ge; et al.

IsoformMapper: a web application for protein-level comparison of splice variants through structural community analysis

RNA: A publication of the RNA Society, Cold Spring Harbor Laboratory Press (CSHL) 2025, Vol. 32, (1) : 1-20

Vergara, Alexander; Hernández-Verdeja, Tamara; Ojeda-May, Pedro; et al.

Metabolism in sync: the circadian clock, a central hub for light-driven chloroplastic and mitochondrial entrainment

Plants , MDPI 2025, Vol. 14, (16)

Cervela-Cardona, Luis Manuel; Francisco, Marta; Strand, Åsa

Microbial contributions to plant growth and stress tolerance: mechanisms for sustainable plant production

Plant Stress, Elsevier 2025, Vol. 17

Sharma, Neha; Mahawar, Lovely; Mishra, Arti; et al.

Molecular underpinning of heavy metal sequestration through advanced remediation strategies in higher plants

Plant Stress, Elsevier 2025, Vol. 16

Agarwal, Himani; Chaudhary, Divya; Aggarwal, Himanshi; et al.

Mutations in the floral regulator gene HUA2 restore flowering to the Arabidopsis trehalose 6-phosphate synthase1 (tps1) mutant

Plant Physiology, Oxford University Press 2025, Vol. 198, (2)

Zeng, Liping; Zacharaki, Vasiliki; van Es, Sam W.; et al.

Please find more publications in DiVA

Latest update: 2020-03-05