Latest publications

The research performed at Plant Physiology is peer-reviewed and published in international scientific journals. Publications together with Doctoral and Licentiate thesis from the department, that are present in DiVA (Digitala vetenskapliga arkivet) are listed below.

Latest publications

A chromosome-level genome assembly of Platycladus orientalis and comparative genomics reveal pivotal roles of transposable elements in gene duplication and pseudogenization across gymnosperm giga-genomes

Plant Communications

Bao, Yu-Tao; Zhang, Ren-Gang; Liu, Hui; et al.

A comparative analysis of receptor-like kinases in Chlorophyta reveals the presence of putative cell wall integrity sensors

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (1)

Marcianò, Demetrio; Dauphin, Bastien G.; Basso, Fabian; et al.

A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)

New Phytologist

Liu, Sijia; Doyle, Siamsa M.; Robinson, Kathryn M.; et al.

A pangenome insight into the genome divergence and flower color diversity among Rhododendron species

BMC Genomics, BioMed Central (BMC) 2026, Vol. 27, (1)

Ma, Hai-Yao; Nie, Shuai; Liu, Hai-Bo; et al.

Adaptive and biochemical responses of Dictyosphaerium sp. AM-2024a to environmental conditions and microplastic interactions: synergy of biofuel production with pollution mitigation

Biotechnology and applied biochemistry, John Wiley & Sons 2026, Vol. 73, (2) : 768-781

Iqbal, Khushboo; Mishra, Arti; Sreedharan, Smitha Mony

Alleleauto: a pipeline for allele identification and analysis of allele-specific gene expression with haplotype-resolved diploid genome assemblies

aBIOTECH, Elsevier 2026, Vol. 7, (3)

Shi, Tian-Le; Nie, Shuai; Bao, Yu-Tao; et al.

An updated perspective: what genes make a tree a tree?

Trends in Plant Science, Elsevier 2026, Vol. 31, (1) : 20-31

Birkeland, Siri; Soldado, Eduardo R.; Ranade, Sonali Sachin; et al.

Associations between volatile fatty acid profiles, methane emissions, and rumen microbiota in sheep fed Ethiopian forage

Frontiers in Microbiology, Frontiers Media S.A. 2026, Vol. 16

Bekele, Wondimagegne; Mahawar, Lovely; Ramin, Mohammad; et al.

ChIP-MS in plant systems: mapping the H3K27ac proteome during the greening process

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (1)

Brun, Alexis; Quevedo, Marti; Sterling, Luis A.; et al.

Clearing the noise: seasonal dynamics of endophytic bacteria in Fagus sylvatica leaves revealed by application of PNA clamps

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (3)

Giubilei, Irene; Turco, Silvia; Cardacino, Antonella; et al.

Comparative co-expression network analysis of abiotic stress response in boreal conifers

Umeå: Umeå University 2026

van Zalen, Elena

Comparative metabarcoding of ITS1, ITS2, and full-length ITS reveals marker- and tissue-specific variation in fungal community profiling in potato

Plant-Environment Interactions, John Wiley & Sons 2026, Vol. 7, (3)

Turco, Silvia; Giubilei, Irene; Mahawar, Lovely; et al.

Conserved molecular signatures of hygrosensory neurons in two dipteran species

PLOS ONE, Public Library of Science (PLoS) 2026, Vol. 21, (4)

Corthals, Kristina; Giri, Ganesh; Reimegård, Johan; et al.

Consistent species richness patterns but not richness estimates based on both ASV and OTU inference methods onITS2-based soil fungal communities

Environmental DNA, John Wiley & Sons 2026, Vol. 8, (1)

Kyaschenko, Julia; Tångrot, Jeanette; Dahlberg, Anders; et al.

Construction of genomic prediction models for leaf protein content in Nicotiana tabacum

Industrial crops and products (Print), Elsevier 2026, Vol. 243

Yu, Le; Guo, Linjie; Liu, Li; et al.

Development and application of a genotyping by target sequencing single-nucleotide polymorphism array panel in Salix suchowensis

BMC Genomics, BioMed Central (BMC) 2026, Vol. 27, (1)

Han, Yu; Gu, Shaobo; Zhu, Mingjia; et al.

Dopamine modulates antioxidant and phenolic responses to alleviate nickel stress in Salvia officinalis

BMC Plant Biology, BioMed Central (BMC) 2026, Vol. 26, (1)

Moazzami Farida, Seyed Hamed; Rahmani, Nosrat; Taghizadeh, Marzieh; et al.

Early establishment of fast-growing tree species on forest land and forested arable land in southern Sweden: implications for forest diversification

Forest Ecology and Management, Elsevier 2026, Vol. 609

Muraro, Luca; Robinson, Kathryn M.; Liziniewicz, Mateusz; et al.

Glucuronoyl esterase of pathogenic Phanerochaete carnosa induces immune responses in aspen independently of its enzymatic activity

Plant Biotechnology Journal, John Wiley & Sons 2026, Vol. 24, (2) : 602-619

Donev, Evgeniy N.; Derba-Maceluch, Marta; Liu, Xiao‐Kun; et al.

Glycoalkaloid-free starch potatoes generated by CRISPR/Cas9-mediated mutations of genes in the glycoalkaloid biosynthesis pathway enable more sustainable uses of by-products from starch production

Plant Biotechnology Journal, John Wiley & Sons 2026, Vol. 24, (3) : 1344-1358

Liu, Ying; Merino, Irene; Gutensohn, Mareike; et al.

Increased susceptibility of Norway spruce to pathogen infection under drought conditions is linked to transcriptional responses related to carbon metabolism

Tree Physiology, Oxford University Press 2026, Vol. 46, (4)

Caballol, Maria; Piombo, Edoardo; Gomez-Gallego, Mireia; et al.

Integrating parental breeding value, genetic gain, and gamete contribution for elite family selection in Platycladus orientalis

Journal of Forestry Research, Springer Nature 2026, Vol. 37, (1)

Jiao, Si-Qian; Li, Meiyu; Li, Zhi-Chao; et al.

L-glutamine modulates root architecture and hormonal balance in Arabidopsis

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (1)

Pařízková, Barbora; Johansson, Annika I.; Juvany, Marta; et al.

Loss of function of the AP2/ERF transcription factor StGAME9 abolishes activation and induction of steroidal glycoalkaloid biosynthesis in potato plants

Plant physiology and biochemistry (Paris), Elsevier 2026, Vol. 237

Liu, Ying; Merino, Irene; Potgieter, Lizel; et al.

Loss of qE does not necessarily lead to photoinhibition: sustained non-photochemical quenching in the absence of PsbS and zeaxanthin

Plant, Cell and Environment, John Wiley & Sons 2026, Vol. 49, (6) : 3405-3425

Cainzos, Maximiliano; Hu, Chen; Pissolato, Maria Dolores; et al.

Microproteins: uncovering hidden layers of the proteome

Microproteins: methods and protocols, Springer Nature 2026 : 3-18

Shankar, Naveen; Wenkel, Stephan

MMGS: a novel genomic prediction framework to integrate genotype, environment and their interactions for multi-environment breeding trials

Horticulture Research, Oxford University Press 2026, Vol. 13, (5)

Zhu, Mingjia; Zheng, Zeyu; Liu, Wei; et al.

Phloem proteomics to identify small open reading frame (sORF)-encoded peptides with a putative role in the control of flowering time in Arabidopsis

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (2)

Moreno-Sanguino, Irene; Collás, Lucía Argente; Samuelsson, Göran; et al.

Photosynthesis-related genetic and transcriptomic variations contribute to adaptive trait diversity in global Arabidopsis thaliana populations

BMC Plant Biology, BioMed Central (BMC) 2026, Vol. 26, (1)

Liu, Wei; Hao, Ruili; Liu, Li; et al.

Plant growth-promoting Pseudomonas strains modulate potato tuberization signalling and development

Journal of Experimental Botany, Oxford University Press 2026, Vol. 77, (13) : 4177-4194

Mishra, Arti; Mahawar, Lovely; Tsitouri, Angeliki; et al.

Plant molecular farming: revolutionizing agriculture through innovation and applications

Singapore: Springer 2026

Gaur, Rajarshi Kumar; Gupta, Ramwant; Yadav, Dinesh; et al.

Plant-derived proteins and their interactions with microorganisms: interactions, applications, and innovations

Plant molecular farming: revolutionizing agriculture through innovation and applications, Singapore: Springer 2026 : 49-78

Tyagi, Jaagriti; Mishra, Arti; Padhy, Ananya; et al.

Preface

Microproteins: methods and protocols, Springer Nature 2026 : v-v

Wenkel, Stephan

Rapid and targeted HILIC-MS/MS quantification of urinary metabolites reveals metabolic alterations in COVID-19 patients

Analytical Methods, Royal Society of Chemistry 2026, Vol. 18, (25) : 5317-5323

Hodek, Ondrej; Edman, Anna; Granvik, Christoffer; et al.

Soil sampling strategy determines detection of arbuscular mycorrhizal fungi and reveals phylogenetically structured bias

Soil Biology and Biochemistry, Elsevier 2026, Vol. 221

Frew, Adam; Dhull, Manjeet; Power, Sally; et al.

Spatiotemporal dynamics of age-related genes and the regulatory network of LaAGL2-3 in Larix kaempferi (Lamb.) Carr. based on the latest genome annotation

BMC Plant Biology, BioMed Central (BMC) 2026, Vol. 26, (1)

Liao, Tang-Quan; Luo, Ao-Jie; Ye, Zha-Long; et al.

Straw mulching differentially shapes the structure and function of below-ground bacterial communities in potato depending on eDNA source and cultivar

Plant-Environment Interactions, John Wiley & Sons 2026, Vol. 7, (1)

Mahawar, Lovely; Mishra, Arti; Tsitouri, Angeliki; et al.

Systemic and local regulation of root growth by vascular trehalose 6-phosphate is correlated with re-allocation of primary metabolites between shoots and roots

Plant, Cell and Environment

Göbel, Moritz; Foster, Jacqueline; Westhoff, Philipp; et al.

The Arabidopsis thaliana METACASPASE IIf regulates sugar metabolism and delays dark-induced leaf senescence

Physiologia Plantarum, John Wiley & Sons 2026, Vol. 178, (2)

Nagahage, Isura Sumeda Priyadarshana; Carrio-Segui, Angela; Pandey, Shashank K.; et al.

The effects of acorn origin, environmental microbiomes and local adaptation on the leaf metabolome

Journal of Chemical Ecology, Springer Nature 2026, Vol. 52, (1)

Ramanathan, Chandrasekar; Goris, Lisse; Mishra, Arti; et al.

The plant energy management machinery: an essential hub for stress resilience and developmental dynamics with great potential for crop improvement

Journal of Experimental Botany, Oxford University Press 2026, Vol. 77, (5) : 1357-1361

Wahl, Vanessa; Hanson, Johannes; Menand, Benoît

The progression of leaf senescence is gated by the cytosolic arginine pool

Nature Plants

Hussain, Shah; Boussardon, Clément; Keech, Olivier

The role of mucosal IgA in protection against influenza A H1N1 virus infection in a real-world setting

eBioMedicine, Elsevier 2026, Vol. 129

Bladh, Oscar; Pongrácz, Tamás; Aguilera, Katherina; et al.

The structure of intact and active Photosystem II from Arabidopsis thaliana at 2.44 Å resolution

New Phytologist, John Wiley & Sons 2026, Vol. 250, (5) : 3014-3025

Forsman, Jack; Graça, André T.; Aydin, Abuzer Orkun; et al.

Transcriptomic analysis of two wheat genotypes in the presence of the pathogen Zymoseptoria tritici and the biological control agent Clonostachys rosea

Physiological and molecular plant pathology, Elsevier 2026, Vol. 141

Chaudhary, Sidhant; Piombo, Edoardo; Dubey, Mukesh; et al.

What makes a tree a tree?: regulatory network controlling wood formation in coniferous and angiosperm forest tree species

Umeå: Umeå University 2026

Soldado, Eduardo R.

A metabolomics and transcriptomics resource for identifying candidate genes in the biosynthesis of specialised metabolites in Populus tremula

Physiologia Plantarum, John Wiley & Sons 2025, Vol. 177, (5)

Rydman, Sara M.; Lihavainen, Jenna; Robinson, Kathryn M.; et al.

A systems genetics approach to identify candidate genes driving salicinoid diversity in Populus tremula

Umeå: Umeå University 2025

Rydman, Sara

Adenylate-driven equilibration of both ribo- and deoxyribonucleotides is under magnesium control: quantification of the Mg2+-signal

Journal of plant physiology (Print), Elsevier 2025, Vol. 304

Kleczkowski, Leszek A.; Igamberdiev, Abir U.

Airborne eDNA captures three decades of ecosystem biodiversity

Nature Communications, Springer Nature 2025, Vol. 16, (1)

Sullivan, Alexis R.; Karlsson, Edvin; Svensson, Daniel; et al.

Please find more publications in DiVA

Latest update: 2020-03-05