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Staff photo Chanaka Mannapperuma

Chanaka Mannapperuma

Help biologist to explore and gain biological insight in large-scale data sets through new visualisation tools & interaction methods.

Contact

E-mail
chanaka.mannapperuma@umu.se
Phone
+46 90 786 54 78

Works at

Affiliation
Postdoctoral fellow at Department of Plant Physiology
Location
KB. K3 (UPSC), Artedigränd 7, Fysiologisk botanik, UPSC, KB. K3 (B3.24.51) Umeå universitet, 901 87 Umeå
2020
The Eucalyptus Genome Integrative Explorer: an online resource for systems genetics in forest tree species
The Plant Journal
Christie, N.; Mannapperuma, Chanaka; Ployet, R.; et al.
2020
Human-computer interaction principles for developing web-based genomics resources
Umeå: Umeå Universitet 2020
Mannapperuma, Chanaka
2020
PlantGenIE-PLAZA: integrating orthology into the PlantGenIE.org resource using the PLAZA pipeline
Mannapperuma, Chanaka; Liu, H.; Bel, M.; et al.
2019
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
The Plant Journal, John Wiley & Sons 2019, Vol. 99, (4) : 589-609
Kumar, Vikash; Hainaut, Matthieu; Delhomme, Nicolas; et al.
2019
Designing Usable Bioinformatics Tools for Specialized Users
Information Technology and Systems: Proceedings of ICITS 2019, Cham: Springer 2019 : 649-670
Mannapperuma, Chanaka; Street, Nathaniel; Waterworth, John
2019
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment
Frontiers in Plant Science, Frontiers Media S.A. 2019, Vol. 10
Wegrzyn, Jill L.; Staton, Margaret A.; Street, Nathaniel R.; et al.
2018
Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce
Plant Physiology, American Society of Plant Biologists 2018, Vol. 176, (4) : 2851-2870
Jokipii-Lukkari, Soile; Delhomme, Nicolas; Schiffthaler, Bastian; et al.
2018
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Proceedings of the National Academy of Sciences of the United States of America, NATL ACAD SCIENCES 2018, Vol. 115, (46) : E10970-E10978
Lin, Yao-Cheng; Wang, Jing; Delhomme, Nicolas; et al.
2017
Spatially resolved transcriptome profiling in model plant species
Nature Plants, Nature Publishing Group 2017, Vol. 3, (6)
Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; et al.
2017
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula
The Plant Cell, Vol. 29, (7) : 1585-1604
Sundell, David; Street, Nathaniel R.; Kumar, Manoj; et al.
2016
High-spatial-resolution transcriptome profiling reveals uncharacterized regulatory complexity underlying cambial growth and wood formation in Populus tremula
Sundell, David; Street, Nathaniel R; Kumar, Manoj; et al.
2015
The Plant Genome Integrative Explorer Resource: PlantGenIE.org
New Phytologist, Vol. 208, (4) : 1149-1156
Sundell, David; Mannapperuma, Chanaka; Netotea, Sergiu; et al.
2010
Tangible Social Network System: Visual Markers for Social Network
Informatik Student Paper Master (INFSPM), 03
Mannapperuma, Chanaka
GenIE-Sys: Genome Integrative Explorer System
Mannapperuma, Chanaka; Waterworth, John; Street, Nathaniel
An integrated functional genomics and systems genetics analysis of leaf shape in Populus tremula 
Schiffthaler, Bastian; Terebieniec, Barbara K; Mähler, Niklas; et al.
View publications in DiVA