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Umeå University
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Staff photo Chanaka Mannapperuma

Chanaka Mannapperuma

Help biologist to explore and gain biological insight in large-scale datasets through new visualisation tools & interaction methods.

Contact

E-mail
chanaka.mannapperuma@umu.se
Phone

Works at

Affiliation
Senior research engineer (on leave) at Department of Plant Physiology Units: Umeå Plant Science Centre - UmU
Location
KB. K3 (UPSC), Artedigränd 7, Fysiologisk botanik, UPSC, KB. K3 (B3.24.51) Umeå universitet, 901 87 Umeå
Identification of growth regulators using cross-species network analysis in plants
Plant Physiology, Oxford University Press 2022, Vol. 190, (4) : 2350-2365
Curci, Pasquale Luca; Zhang, Jie; Mähler, Niklas; et al.
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)
BMC Bioinformatics, BioMed Central 2021, Vol. 22, (1)
Christie, Nanette; Mannapperuma, Chanaka; Ployet, Raphael; et al.
Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
Frontiers in Plant Science, Frontiers Media S.A. 2021, Vol. 12
Liu, Hui; Yan, Xue-Mei; Wang, Xin-Rui; et al.
The BOP-type co-transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
The Plant Journal, John Wiley & Sons 2021, Vol. 106, (5) : 1366-1386
Shen, Defeng; Holmer, Rens; Kulikova, Olga; et al.
The Eucalyptus Genome Integrative Explorer: an online resource for systems genetics in forest tree species
The Plant Journal
Christie, N.; Mannapperuma, Chanaka; Ployet, R.; et al.
Genome-Wide Identification of Populus Malectin/Malectin-Like Domain-Containing Proteins and Expression Analyses Reveal Novel Candidates for Signaling and Regulation of Wood Development
Frontiers in Plant Science, FRONTIERS MEDIA SA 2020, Vol. 11 : 1-20
Kumar, Vikash; Donev, Evgeniy N.; Barbut, Felix R.; et al.
Human-computer interaction principles for developing web-based genomics resources
Umeå: Umeå Universitet 2020
Mannapperuma, Chanaka
PlantGenIE-PLAZA: integrating orthology into the PlantGenIE.org resource using the PLAZA pipeline
Mannapperuma, Chanaka; Liu, H.; Bel, M.; et al.
Leaf shape in Populus tremula is a complex, omnigenic trait
Ecology and Evolution, John Wiley & Sons 2020, Vol. 10, (21) : 11922-11940
Mähler, Niklas; Schiffthaler, Bastian; Robinson, Kathryn M.; et al.
Chromosome-level genome assembly of a parent species of widely cultivated azaleas
Nature Communications, Nature Publishing Group 2020, Vol. 11, (1)
Yang, Fu-Sheng; Nie, Shuai; Liu, Hui; et al.
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
The Plant Journal, John Wiley & Sons 2019, Vol. 99, (4) : 589-609
Kumar, Vikash; Hainaut, Matthieu; Delhomme, Nicolas; et al.
Designing Usable Bioinformatics Tools for Specialized Users
Information Technology and Systems: Proceedings of ICITS 2019, Cham: Springer 2019 : 649-670
Mannapperuma, Chanaka; Street, Nathaniel; Waterworth, John
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment
Frontiers in Plant Science, Frontiers Media S.A. 2019, Vol. 10
Wegrzyn, Jill L.; Staton, Margaret A.; Street, Nathaniel R.; et al.
Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce
Plant Physiology, American Society of Plant Biologists 2018, Vol. 176, (4) : 2851-2870
Jokipii-Lukkari, Soile; Delhomme, Nicolas; Schiffthaler, Bastian; et al.
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Proceedings of the National Academy of Sciences of the United States of America, NATL ACAD SCIENCES 2018, Vol. 115, (46) : E10970-E10978
Lin, Yao-Cheng; Wang, Jing; Delhomme, Nicolas; et al.
Spatially resolved transcriptome profiling in model plant species
Nature Plants, Nature Publishing Group 2017, Vol. 3, (6)
Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; et al.
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula
The Plant Cell, Vol. 29, (7) : 1585-1604
Sundell, David; Street, Nathaniel R.; Kumar, Manoj; et al.
High-spatial-resolution transcriptome profiling reveals uncharacterized regulatory complexity underlying cambial growth and wood formation in Populus tremula
Sundell, David; Street, Nathaniel R; Kumar, Manoj; et al.
The Plant Genome Integrative Explorer Resource: PlantGenIE.org
New Phytologist, Vol. 208, (4) : 1149-1156
Sundell, David; Mannapperuma, Chanaka; Netotea, Sergiu; et al.
Tangible Social Network System: Visual Markers for Social Network
Informatik Student Paper Master (INFSPM), 03
Mannapperuma, Chanaka
GenIE-Sys: Genome Integrative Explorer System
Mannapperuma, Chanaka; Waterworth, John; Street, Nathaniel
An integrated functional genomics and systems genetics analysis of leaf shape in Populus tremula 
Schiffthaler, Bastian; Terebieniec, Barbara K; Mähler, Niklas; et al.
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