Publications

DiVA Publications

ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation

EMBO Journal, John Wiley & Sons 2021, Vol. 40, (3)

Borenas, Marcus; Umapathy, Ganesh; Lai, Wei-Yun; et al.

Binding of non-canonical peptidoglycan controls Vibrio cholerae broad spectrum racemase activity

Computational and Structural Biotechnology Journal, Elsevier 2021, Vol. 19 : 1119-1126

Espaillat, Akbar; Carrasco-López, Cesar; Bernardo-García, Noelia; et al.

Co- and polymicrobial infections in the gut mucosa: the host-microbiota-pathogen perspective

Cellular Microbiology, John Wiley & Sons 2021, Vol. 23, (2)

Frisan, Teresa

CpxR regulates the Rcs phosphorelay system in controlling the Ysc-Yop type III secretion system in Yersinia pseudotuberculosis

Microbiology, Microbiology Society 2021, Vol. 167, (1)

Fei, Keke; Chao, Hong-Jun; Hu, Yangbo; et al.

Disinfection chemicals mode of action on the bacterial spore structure and their Raman spectra

Analytical Chemistry, American Chemical Society (ACS) 2021, Vol. 93, (6) : 3146-3153

Malyshev, Dmitry; Dahlberg, Tobias; Wiklund, Krister; et al.

Interaction of artemisinin protects the activity of antioxidant enzyme catalase: a biophysical study

International Journal of Biological Macromolecules, Elsevier 2021, Vol. 172 : 418-428

Samal, Rashmi R.; Kumari, Kanchan; Sahoo, Yashaswinee; et al.

JAK3 Is Expressed in the Nucleus of Malignant T Cells in Cutaneous T Cell Lymphoma (CTCL).

Cancers, Vol. 13, (2)

Vadivel, Chella Krishna; Gluud, Maria; Torres-Rusillo, Sara; et al.

Metabolomic profiling reveals plasma GlycA and GlycB as a potential biomarkers for treatment efficiency in rheumatoid arthritis

Journal of Pharmaceutical and Biomedical Analysis, Elsevier 2021, Vol. 197

Dudka, Ilona; Chachaj, Angelika; Sebastian, Agata; et al.

Mycobacterium tuberculosis Rv3160c is a TetR-like transcriptional repressor that regulates expression of the putative oxygenase Rv3161c

Scientific Reports, Springer Nature 2021, Vol. 11, (1)

Tükenmez, Hasan; Sarkar, Souvik; Anoosheh, Saber; et al.

Neuronal diversity and convergence in a visual system developmental atlas

Nature, Nature Publishing Group 2021, Vol. 589 : 88-95

Özel, Mehmet Neset; Simon, Felix; Jafari, Shadi; et al.

Odor response adaptation in Drosophila: a continuous individualization process

Cell and Tissue Research, Springer 2021, Vol. 83, (1) : 143-148

Jafari, Shadi; Alenius, Mattias

Regulation of Decay Accelerating Factor Primes Human Germinal Center B Cells for Phagocytosis

Frontiers in Immunology, Frontiers Media S.A. 2021, Vol. 11

Dernstedt, Andy; Leidig, Jana; Holm, Anna; et al.

Ribosome association primes the stringent factor Rel for tRNA-dependent locking in the A-site and activation of (p)ppGpp synthesis

Nucleic Acids Research, Oxford University Press 2021, Vol. 49, (1) : 444-457

Takada, Hiraku; Roghanian, Mohammad; Caballero-Montes, Julien; et al.

Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance

Nature Chemical Biology

Svetlov, Maxim S.; Syroegin, Egor A.; Aleksandrova, Elena V.; et al.

The antimalarial efficacy and mechanism of resistance of the novel chemotype DDD01034957

Scientific Reports, Springer Nature 2021, Vol. 11, (1)

Miguel-Blanco, Celia; Murithi, James M.; Benavente, Ernest Diez; et al.

Transcriptome Profiling of Staphylococcus aureus Associated Extracellular Vesicles Reveals Presence of Small RNA-Cargo

Frontiers in Molecular Biosciences, Frontiers Media S.A. 2021, Vol. 7

Joshi, Bishnu; Singh, Bhupender; Nadeem, Aftab; et al.

Vibrio cholerae cytotoxin MakA induces noncanonical autophagy resulting in the spatial inhibition of canonical autophagy

Journal of Cell Science, The Company of Biologists 2021, Vol. 134, (5)

Corkery, Dale; Nadeem, Aftab; Aung, Kyaw Min; et al.

A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

Nature Communications, Nature Publishing Group 2020, Vol. 11, (1)

Wylensek, David; Hitch, Thomas C. A.; Riedel, Thomas; et al.

A Cyclic-di-GMP signalling network regulates biofilm formation and surface associated motility of Acinetobacter baumannii 17978

Scientific Reports, Nature Publishing Group 2020, Vol. 10, (1)

Ahmad, Irfan; Nygren, Evelina; Khalid, Fizza; et al.

A holin/peptidoglycan hydrolase-dependent protein secretion system

Molecular Microbiology

Palmer, Tracy; Finney, Alexander; Saha, Chayan Kumar; et al.

A Novel Chemically Differentiated Mouse Embryonic Stem Cell-Based Model to Study Liver Stages of Plasmodium berghei

Stem cell reports, Elsevier 2020, Vol. 14, (6) : 1123-1134

Tripathi, Jaishree; Segeritz, Charis-Patricia; Griffiths, Gareth; et al.

A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes

Journal of Bacteriology, American Society for Microbiology 2020, Vol. 202, (11)

Hansen, Sabine; Hall, Michael; Grundström, Christin; et al.

A nucleotide-switch mechanism mediates opposing catalytic activities of Rel enzymes

Nature Chemical Biology, Nature Publishing Group 2020, Vol. 16, (8) : 834-840

Tamman, Hedvig; Van Nerom, Katleen; Takada, Hiraku; et al.

A single-nucleotide polymorphism in a Plasmodium berghei ApiAP2 transcription factor alters the development of host immunity

Science Advances, American Association for the Advancement of Science 2020, Vol. 6, (6)

Akkaya, Munir; Bansal, Abhisheka; Sheehan, Patrick W.; et al.

A widespread toxin-antitoxin system exploiting growth control via alarmone signaling

Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences 2020, Vol. 117, (19) : 10500-10510

Jimmy, Steffi; Saha, Chayan Kumar; Kurata, Tatsuaki; et al.

Activity-dependent regulation of translation in olfactory sensory neurons of naris- occluded mice

Chemical Senses, Oxford University Press 2020, Vol. 45, (2) : 142-143

Maurya, Devendra Kumar; Bohm, Staffan

Adaptation of Vibrio cholerae to Hypoxic Environments

Frontiers in Microbiology, Frontiers Media S.A. 2020, Vol. 11

Bueno, Emilio; Pinedo, Victor; Cava, Felipe

Airborne microbial biodiversity and seasonality in Northern and Southern Sweden

PeerJ, PeerJ 2020, Vol. 8

Karlsson, Edvin; Johansson, Anna-Mia; Ahlinder, Jon; et al.

An enhanced toolkit for the generation of knockout and marker-free fluorescent Plasmodium chabaudi

Wellcome open research, Wellcome open research 2020, Vol. 5

Marr, Edward J; Milne, Rachel M; Anar, Burcu; et al.

An mRNA-mRNA Interaction Couples Expression of a Virulence Factor and Its Chaperone in Listeria monocytogenes

Cell reports, cell press 2020, Vol. 30, (12) : 4027-+

Ignatov, Dmitriy; Vaitkevicius, Karolis; Durand, Sylvain; et al.

An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3 '-to-5 ' exoRNases and RNase Y

Nature Communications, Nature Publishing Group 2020, Vol. 11, (1)

Broglia, Laura; Lécrivain, Anne-Laure; Renault, Thibaud T.; et al.

Analysis of erythrocyte signalling pathways during Plasmodium falciparum infection identifies targets for host-directed antimalarial intervention

Nature Communications, Nature Publishing Group 2020, Vol. 11, (1)

Adderley, Jack D.; von Freyend, Simona John; Jackson, Sarah A.; et al.

Analysis of Gram-negative Bacteria Peptidoglycan by Ultra-performance Liquid Chromatography

Bio-protocol, Bio-protocol 2020, Vol. 10, (19)

Alvarez, Laura; Cordier, Baptiste; van Teeffelen, Sven; et al.

Bacterial Genotoxin-Induced DNA Damage and Modulation of the Host Immune Microenvironment

Toxins, MDPI 2020, Vol. 12, (2)

Martin, Oceane C. B.; Frisan, Teresa

Bioengineering of non-pathogenic Escherichia coli to enrich for accumulation of environmental copper

Scientific Reports, Nature Publishing Group 2020, Vol. 10

Gahlot, Dharmender K; Taheri, Nayyer; Mahato, Dhani Ram; et al.

Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches

Nature Chemical Biology, Nature Publishing Group 2020, Vol. 16, (5) : 587-595

Bratovic, Majda; Fonfara, Ines; Chylinski, Krzysztof; et al.

Characterization of a transcriptional TPP riboswitch in the human pathogen Neisseria meningitidis

RNA Biology, Taylor & Francis Group 2020, Vol. 17, (5) : 718-730

Righetti, Francesco; Materne, Solange Lise; Boss, John; et al.

Circumpolar diversification of the Ixodes uriae tick virome

PLoS Pathogens, Public Library Science 2020, Vol. 16, (8)

Pettersson, John H.-O.; Ellström, Patrik; Ling, Jiaxin; et al.

Class-A penicillin binding proteins do not contribute to cell shape but repair cell-wall defects

eLIFE, eLife Sciences Publications 2020, Vol. 9

Vigouroux, Antoine; Cordier, Baptiste; Aristov, Andrey; et al.

Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

BMC Genomics, Springer Nature 2020, Vol. 21, (1)

Cervantes-Rivera, Ramón; Tronnet, Sophie; Puhar, Andrea

Coordinating type III secretion system biogenesis in Yersinia pseudotuberculosis

Umeå: Umeå University 2020

Gurung, Jyoti Mohan

Cross-reactivity between tumor MHC class I-restricted antigens and an enterococcal bacteriophage

Science, American Association for the Advancement of Science 2020, Vol. 369, (6506) : 936-942

Fluckiger, Aurelie; Daillere, Romain; Sassi, Mohamed; et al.

Development and validation of a 25-Gene Panel urine test for prostate cancer diagnosis and potential treatment follow-up

BMC Medicine, BioMed Central 2020, Vol. 18

Johnson, Heather; Guo, Jinan; Xuhui, Zhang; et al.

Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome

PLoS biology, Public Library of Science 2020, Vol. 18, (10)

Ehrenbolger, Kai; Jespersen, Nathan; Sharma, Himanshu; et al.

Discrimination between Breast Cancer Cells and White Blood Cells by Non-Invasive Measurements: Implications for a Novel In Vitro-Based Circulating Tumor Cell Model Using Digital Holographic Cytometry

Applied Sciences, MDPI 2020, Vol. 10, (14)

El-Schich, Zahra; Janicke, Birgit; Alm, Kersti; et al.

Does an Apple a Day Also Keep the Microbes Away?: The Interplay Between Diet, Microbiota, and Host Defense Peptides at the Intestinal Mucosal Barrier

Frontiers in Immunology, Frontiers Media S.A. 2020, Vol. 11

Puertolas-Balint, Fabiola; Schröder, Björn

Ecological Advantages and Evolutionary Limitations of Aggregative Multicellular Development

Current Biology, Cell Press 2020, Vol. 30, (21) : 4155-4164

Pentz, Jennifer T.; Marquez-Zacarias, Pedro; Bozdag, G. Ozan; et al.

Effect of sample preparation techniques upon single cell chemical imaging: A practical comparison between synchrotron radiation based X-ray fluorescence (SR-XRF) and Nanoscopic Secondary Ion Mass Spectrometry (nano-SIMS)

Analytica Chimica Acta, Elsevier 2020, Vol. 1106 : 22-32

De Samber, Björn; De Rycke, Riet; De Bruyne, Michiel; et al.

Elevated levels of VCA0117 in response to external signals activates type VI secretion in Vibrio cholerae A1552

Environmental Microbiology, John Wiley & Sons 2020, Vol. 22, (10) : 4409-4423

Seibt, Henrik; Aung, Kyaw Min; Ishikawa, Takahiko; et al.

Establishing a Urine-Based Biomarker Assay for Prostate Cancer Risk Stratification

Frontiers in Cell and Developmental Biology, Swiss: Frontiers Media S.A. 2020, Vol. 8

Guo, Jinan; Liu, Dale; Zhang, Xuhui; et al.

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