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Staff photo Patrik Rydén

Patrik Rydén

Contact

E-mail
patrik.ryden@umu.se
Phone
+46 90 786 95 62

Works at

Affiliation
Associate professor at Department of Mathematics and Mathematical Statistics Role: Deputy head of department
Location
MIT-huset, plan 3, Matematik och matematisk statistik, E351 Umeå universitet, 901 87 Umeå
2020
Whole genome profiling refines a panel of correlates to predict vaccine efficacy against Mycobacterium tuberculosis
Tuberculosis, Elsevier 2020, Vol. 120
Kurtz, Sherry L.; Gardina, Paul J.; Myers, Timothy G.; et al.
2020
Centralization Within Sub-Experiments Enhances the Biological Relevance of Gene Co-expression Networks: A Plant Mitochondrial Case Study
Frontiers in Plant Science, Frontiers Media S.A. 2020, Vol. 11
Law, Simon R; Kellgren, Therese; Björk, Rafael; et al.
2020
Vaccine-Mediated Mechanisms Controlling Francisella tularensis SCHU S4 Growth in a Rat Co-Culture System
Pathogens, MDPI 2020, Vol. 9, (5)
Lindgren, Helena; Eneslätt, Kjell; Golovliov, Igor; et al.
2019
Temporal and long-term gut microbiota variation in allergic disease: a prospective study from infancy to school age
Allergy. European Journal of Allergy and Clinical Immunology, John Wiley & Sons 2019, Vol. 74, (1) : 176-185
Simonyté Sjödin, Kotryna; Hammarström, Marie-Louise; Rydén, Patrik; et al.
2019
Gene expression profiles define molecular subtypes of prostate cancer bone metastases with different outcomes and morphology traceable back to the primary tumor
Molecular Oncology, John Wiley & Sons 2019, Vol. 13, (8) : 1763-1777
Thysell, Elin; Vidman, Linda; Bovinder Ylitalo, Erik; et al.
2019
Cluster analysis on high dimensional RNA-seq data with applications to cancer research: An evaluation study
PLoS ONE, San Francisco: Public Library of Science 2019, Vol. 14, (12)
Vidman, Linda; Källberg, David; Rydén, Patrik
2018
A panel of correlates predicts vaccine-induced protection of rats against respiratory challenge with virulent Francisella tularensis
PLoS ONE, Public Library of Science 2018, Vol. 13, (5)
De Pascalis, Roberto; Hahn, Andrew; Brook, Helen M.; et al.
2018
Vaccine-mediated mechanisms controlling replication of Francisella tularensis in human peripheral blood mononuclear cells using a co-culture system
Frontiers in Cellular and Infection Microbiology, Frontiers Media S.A. 2018, Vol. 8
Eneslätt, Kjell; Golovliov, Igor; Rydén, Patrik; et al.
2018
A moment-distance hybrid method for estimating a mixture of two symmetric densities
Modern Stochastics: Theory and Applications, Vol. 5, (1) : 1-36
Källberg, David; Belyaev, Yuri; Rydén, Patrik
2017
High-risk regions and outbreak modelling of tularemia in humans
Epidemiology and Infection, CAMBRIDGE UNIV PRESS 2017, Vol. 145, (3) : 482-490
Desvars-Larrive, Amélie; Liu, X.; Hjertqvist, M.; et al.
2017
Results of application of the ISPD guidelines to the management of peritoneal dialysis in a single center in Sudan
Journal of Infection and Public Health, ELSEVIER SCIENCE LONDON 2017, Vol. 10, (3) : 348-352
Kheir, Sahar M.; Kafi, Shamsoun K.; Ryden, Patrik; et al.
2017
A new concept and a comprehensive evaluation of SYSMEX UF-1000i flow cytometer to identify culture-negative urine specimens in patients with UTI
European Journal of Clinical Microbiology and Infectious Diseases, Springer 2017, Vol. 36, (9) : 1691-1703
Monsen, Tor; Ryden, Patrik
2017
A statistically compiled test battery for feasible evaluation of knee function after rupture of the Anterior Cruciate Ligament - derived from long-term follow-up data.
PLoS ONE, Vol. 12, (5)
Schelin, Lina; Tengman, Eva; Ryden, Patrik; et al.
2017
SNX10 gene mutation leading to osteopetrosis with dysfunctional osteoclasts
Scientific Reports, Nature Publishing Group 2017, Vol. 7
Stattin, Eva-Lena; Henning, Petra; Klar, Joakim; et al.
2016
Emerging evidence of the role of gut microbiota in the development of allergic diseases
Current Opinion in Allergy and Clinical Immunology, Vol. 16, (4) : 390-395
Sjödin, Kotryna Simonyte; Vidman, Linda; Rydén, Patrik; et al.
2015
Epidemiology and Ecology of Tularemia in Sweden, 1984-2012
Emerging Infectious Diseases, Vol. 21, (1) : 32-39
Desvars, Amélie; Furberg, Maria; Hjertqvist, Marika; et al.
2015
Epidemiology and Ecology of Tularemia in Sweden
International Journal of Epidemiology, Vol. 44 : 58-58
Desvars, Amélie; Furberg, Maria; Hjertqvist, Marika; et al.
2015
Mutations in Collagen, Type XVII, Alpha 1 (COL17A1) Cause Epithelial Recurrent Erosion Dystrophy (ERED)
Human Mutation, John Wiley & Sons 2015, Vol. 36, (4) : 463-473
Jonsson, Frida; Byström, Berit; Davidson, Alice E.; et al.
2015
Flow Cytometry Analysis Using Sysmex UF-1000i Classifies Uropathogens Based on Bacterial, Leukocyte, and Erythrocyte Counts in Urine Specimens among Patients with Urinary Tract Infections
Journal of Clinical Microbiology, Vol. 53, (2) : 539-545
Monsen, Tor; Ryden, Patrik
2015
Gut microbiome and innate immune response patterns in IgE-associated eczema
Clinical and Experimental Allergy, Vol. 45, (9) : 1419-1429
West, Christina E.; Ryden, Patrik; Lundin, D.; et al.
2014
Models Derived from In Vitro Analyses of Spleen, Liver, and Lung Leukocyte Functions Predict Vaccine Efficacy against the Francisella tularensis Live Vaccine Strain (LVS)
mBio, Vol. 5, (2)
De Pascalis, Roberto; Chou, Alicia Y.; Ryden, Patrik; et al.
2014
Immortalization of T-Cells Is Accompanied by Gradual Changes in CpG Methylation Resulting in a Profile Resembling a Subset of T-Cell Leukemias
Neoplasia, Vol. 16, (7) : 606-615
Degerman, Sofie; Landfors, Mattias; Siwicki, Jan Konrad; et al.
2014
Within-population distribution of trimethoprim resistance in Escherichia coli before and after a community-wide intervention on trimethoprim use
Antimicrobial Agents and Chemotherapy, Vol. 58, (12) : 7492-7500
Sundqvist, Martin; Granholm, Susanne; Naseer, Umaer; et al.
2013
The Shared Genome Is a Pervasive Constraint on the Evolution of Sex-Biased Gene Expression
Molecular biology and evolution, Vol. 30, (9) : 2168-2176
Griffin, Robert M.; Dean, Rebecca; Grace, Jaime L.; et al.
2013
Functional Studies of the Yeast Med5, Med15 and Med16 Mediator Tail Subunits
PLoS ONE, Vol. 8, (8) : e73137-
Larsson, Miriam; Uvell, Hanna; Sandström, Jenny; et al.
2013
Correlates of protection following vaccination of mice with gene deletion mutants of Francisella tularensis subspecies tularensis strain, SCHU S4 that elicit varying degrees of immunity to systemic and respiratory challenge with wild-type bacteria
Molecular Immunology, Vol. 54, (1) : 58-67
Rydén, Patrik; Twine, Susan; Shen, Hua; et al.
2013
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants
BMC Genomics, BioMed Central 2013, Vol. 14
Srivastava, Vaibhav; Obudulu, Ogonna; Bygdell, Joakim; et al.
2013
Cycles of light and dark co-ordinate reversible colony differentiation in Listeria monocytogenes
Molecular Microbiology, Vol. 87, (4) : 909-924
Tiensuu, Teresa; Andersson, Christopher; Ryden, Patrik; et al.
2012
Pr is a member of a restricted class of σ70-dependent promoters that lack a recognizable -10 element
Nucleic Acids Research, Vol. 40, (22) : 11308-11320
Del Peso-Santos, Teresa; Landfors, Mattias; Skärfstad, Eleonore; et al.
2012
Outbreaks of tularemia in a boreal forest region depends on mosquito prevalence
Journal of Infectious Diseases, Vol. 205, (2) : 297-304
Rydén, Patrik; Björk, Rafael; Schäfer, Martina L; et al.
2012
BALB/c mice, but not C57BL/6 mice immunized with a Delta clpB mutant of Francisella tularensis subspecies tularensis are protected against respiratory challenge with wild-type bacteria: Association of protection with post-vaccination and post-challenge immune responses
Vaccine, Vol. 30, (24) : 3634-3645
Twine, Susan; Shen, Hua; Harris, Gregory; et al.
2012
EGFR gene variants are associated with specific somatic aberrations in glioma
Neuro-Oncology, Vol. 14, (Suppl. 3) : 46-46
Wibom, Carl; Ghasimi, Soma; Van Loo, P.; et al.
2012
EGFR gene variants are associated with specific somatic aberrations in glioma
PLoS ONE, plosone.org 2012, Vol. 7, (12) : e47929-
Wibom, Carl; Ghasimi, Soma; Van Loo, Peter; et al.
2012
DNA-repair gene variants are associated with glioblastoma survival
Acta Oncologica, Informa Healthcare 2012, Vol. 51, (3) : 325-332
Wibom, Carl; Sjöström, Sara; Henriksson, Roger; et al.
2011
Elongator Complex Influences Telomeric Gene Silencing and DNA Damage Response by Its Role in Wobble Uridine tRNA Modification
PLoS genetics, Public Library of Science 2011, Vol. 7, (9) : e1002258-
Chen, Changchun; Huang, Bo; Eliasson, Mattias; et al.
2011
Persistence of cell-mediated immunity three decades after vaccination with the live vaccine strain of Francisella tularensis
European Journal of Immunology, Weinheim: Wiley-VCH Verlagsgesellschaft 2011, Vol. 41, (4) : 974-980
Eneslätt, Kjell; Rietz, Cecilia; Rydén, Patrik; et al.
2011
Normalization of high dimensional genomics data where the distribution of the altered variables is skewed
PLoS ONE, Vol. 6, (11) : e27942-
Landfors, Mattias; Philip, Philge; Rydén, Patrik; et al.
2011
miRNA analysis of formalin-fixed squamous cell carcinomas of the tongue is affected by age of the samples
International Journal of Oncology, Spandidos Publ. Ltd 2011, Vol. 38, (1) : 61-69
Rentoft, Matilda; Fahlén, Jessica; Coates, PJ; et al.
2011
Classification of microarrays: synergistic effects between normalization, gene selection and machine learning
BMC Bioinformatics, BioMed Central 2011, Vol. 12, (1)
Önskog, Jenny; Freyhult, Eva; Landfors, Mattias; et al.
2010
MicroRNA-microarray data analysis in the precence of FFPE storage time effects
Fahlén, Jessica; Rentoft, Matilda; Rydén, Patrik
2010
Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
BMC Bioinformatics, BioMed Central 2010, Vol. 11
Freyhult, Eva; Landfors, Mattias; Önskog, Jenny; et al.
2010
Molecular immune responses to aerosol challenge with Francisella tularensis in mice inoculated with live vaccine candidates of varying efficacy
PloS one, Vol. 5, (10) : e13349-
Shen, Hua; Harris, Gregory; Chen, Wangxue; et al.
2010
Directed screen of Francisella novicida virulence determinants using Drosophila melanogaster
Infection and Immunity, ASM International 2010, Vol. 78, (7) : 3118-3128
Åhlund, Monika K; Rydén, Patrik; Sjöstedt, Anders; et al.
2009
Bioinformatics strategies for cDNA-microarray data processing
Batch effects and noise in microarray experiments: sources and solutions, Wiley and Sons 2009 : 61-74
Fahlén, Jessica; Landfors, Mattias; Freyhult, Eva; et al.
2009
MC-normalization: a novel method for dye-normalization of two-channel microarray data
Statistical Applications in Genetics and Molecular Biology, Berkeley: The Berkeley Electronic Press (bepress) 2009, Vol. 8, (1) : 42-
Landfors, Mattias; Fahlén, Jessica; Rydén, Patrik
2009
Effects of climate change on tularemia disease activity in Sweden
Global Health Action, Vol. 2
Rydén, Patrik; Sjöstedt, Anders; Johansson, Anders
2009
Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster
PLoS Genetics, Vol. 5, (5)
Stenberg, Per; Lundberg, Lina E.; Johansson, Anna-Mia; et al.
2008
Drosophila melanogaster as a model for elucidating the pathogenicity of Francisella tularensis
Cellular Microbiology, Vol. 10, (6) : 1327-1338
Vonkavaara, Malin; Telepnev, Maxim V; Rydén, Patrik; et al.
2007
Gene array identification of Ipf1/Pdx1 -/- regulated genes in pancreatic progenitor cells.
BMC Developmental Biology, Vol. 7, (1) : 129-
Svensson, Per; Williams, Cecilia; Lundeberg, Joakim; et al.
2006
T A microarray analysis of the murine macrophage response to infection with Francisella tularensis LVS
Journal of Medical Microbiology, Vol. 55, (8) : 1023-1033
Andersson, Henrik; Hartmanova (Andersson), Blanka; Landfors, Mattias; et al.
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