Patrik Ryden

Kontakt

patrik.ryden@umu.se

090-786 95 62

Verksam vid

Universitetslektor vid Institutionen för matematik och matematisk statistik Roll: Biträdande prefekt

MIT-huset, plan 3, Matematik och matematisk statistik, F340 Umeå universitet, 901 87 Umeå

2019

Temporal and long-term gut microbiota variation in allergic disease: a prospective study from infancy to school age

Allergy. European Journal of Allergy and Clinical Immunology, John Wiley & Sons 2019, Vol. 74, (1) : 176-185

Simonyté Sjödin, Kotryna; Hammarström, Marie-Louise; Rydén, Patrik; et al.

2019

Gene expression profiles define molecular subtypes of prostate cancer bone metastases with different outcomes and morphology traceable back to the primary tumor

Molecular Oncology, John Wiley & Sons 2019, Vol. 13, (8) : 1763-1777

Thysell, Elin; Vidman, Linda; Bovinder Ylitalo, Erik; et al.

2018

A panel of correlates predicts vaccine-induced protection of rats against respiratory challenge with virulent Francisella tularensis

PLoS ONE, Public Library of Science 2018, Vol. 13, (5)

De Pascalis, Roberto; Hahn, Andrew; Brook, Helen M.; et al.

2018

Vaccine-mediated mechanisms controlling replication of Francisella tularensis in human peripheral blood mononuclear cells using a co-culture system

Frontiers in Cellular and Infection Microbiology, Frontiers Media S.A. 2018, Vol. 8

Eneslätt, Kjell; Golovliov, Igor; Rydén, Patrik; et al.

2018

A moment-distance hybrid method for estimating a mixture of two symmetric densities

Modern Stochastics: Theory and Applications, Vol. 5, (1) : 1-36

Källberg, David; Belyaev, Yuri; Rydén, Patrik

2017

High-risk regions and outbreak modelling of tularemia in humans

Epidemiology and Infection, CAMBRIDGE UNIV PRESS 2017, Vol. 145, (3) : 482-490

Desvars-Larrive, Amélie; Liu, X.; Hjertqvist, M.; et al.

2017

Results of application of the ISPD guidelines to the management of peritoneal dialysis in a single center in Sudan

Journal of Infection and Public Health, ELSEVIER SCIENCE LONDON 2017, Vol. 10, (3) : 348-352

Kheir, Sahar M.; Kafi, Shamsoun K.; Ryden, Patrik; et al.

2017

A new concept and a comprehensive evaluation of SYSMEX UF-1000i flow cytometer to identify culture-negative urine specimens in patients with UTI

European Journal of Clinical Microbiology and Infectious Diseases, Springer 2017, Vol. 36, (9) : 1691-1703

Monsen, Tor; Ryden, Patrik

2017

A statistically compiled test battery for feasible evaluation of knee function after rupture of the Anterior Cruciate Ligament - derived from long-term follow-up data.

PLoS ONE, Vol. 12, (5)

Schelin, Lina; Tengman, Eva; Ryden, Patrik; et al.

2017

SNX10 gene mutation leading to osteopetrosis with dysfunctional osteoclasts

Scientific Reports, Nature Publishing Group 2017, Vol. 7

Stattin, Eva-Lena; Henning, Petra; Klar, Joakim; et al.

2016

Emerging evidence of the role of gut microbiota in the development of allergic diseases

Current Opinion in Allergy and Clinical Immunology, Vol. 16, (4) : 390-395

Sjödin, Kotryna Simonyte; Vidman, Linda; Rydén, Patrik; et al.

2015

Epidemiology and Ecology of Tularemia in Sweden, 1984-2012

Emerging Infectious Diseases, Vol. 21, (1) : 32-39

Desvars, Amélie; Furberg, Maria; Hjertqvist, Marika; et al.

2015

Epidemiology and Ecology of Tularemia in Sweden

International Journal of Epidemiology, Vol. 44 : 58-58

Desvars, Amélie; Furberg, Maria; Hjertqvist, Marika; et al.

2015

Mutations in Collagen, Type XVII, Alpha 1 (COL17A1) Cause Epithelial Recurrent Erosion Dystrophy (ERED)

Human Mutation, John Wiley & Sons 2015, Vol. 36, (4) : 463-473

Jonsson, Frida; Byström, Berit; Davidson, Alice E.; et al.

2015

Flow Cytometry Analysis Using Sysmex UF-1000i Classifies Uropathogens Based on Bacterial, Leukocyte, and Erythrocyte Counts in Urine Specimens among Patients with Urinary Tract Infections

Journal of Clinical Microbiology, Vol. 53, (2) : 539-545

Monsen, Tor; Ryden, Patrik

2015

Gut microbiome and innate immune response patterns in IgE-associated eczema

Clinical and Experimental Allergy, Vol. 45, (9) : 1419-1429

West, Christina E.; Ryden, Patrik; Lundin, D.; et al.

2014

Models Derived from In Vitro Analyses of Spleen, Liver, and Lung Leukocyte Functions Predict Vaccine Efficacy against the Francisella tularensis Live Vaccine Strain (LVS)

mBio, Vol. 5, (2)

De Pascalis, Roberto; Chou, Alicia Y.; Ryden, Patrik; et al.

2014

Immortalization of T-Cells Is Accompanied by Gradual Changes in CpG Methylation Resulting in a Profile Resembling a Subset of T-Cell Leukemias

Neoplasia, Vol. 16, (7) : 606-615

Degerman, Sofie; Landfors, Mattias; Siwicki, Jan Konrad; et al.

2014

Within-population distribution of trimethoprim resistance in Escherichia coli before and after a community-wide intervention on trimethoprim use

Antimicrobial Agents and Chemotherapy, Vol. 58, (12) : 7492-7500

Sundqvist, Martin; Granholm, Susanne; Naseer, Umaer; et al.

2013

The Shared Genome Is a Pervasive Constraint on the Evolution of Sex-Biased Gene Expression

Molecular biology and evolution, Vol. 30, (9) : 2168-2176

Griffin, Robert M.; Dean, Rebecca; Grace, Jaime L.; et al.

2013

Functional Studies of the Yeast Med5, Med15 and Med16 Mediator Tail Subunits

PLoS ONE, Vol. 8, (8) : e73137-

Larsson, Miriam; Uvell, Hanna; Sandström, Jenny; et al.

2013

Correlates of protection following vaccination of mice with gene deletion mutants of Francisella tularensis subspecies tularensis strain, SCHU S4 that elicit varying degrees of immunity to systemic and respiratory challenge with wild-type bacteria

Molecular Immunology, Vol. 54, (1) : 58-67

Rydén, Patrik; Twine, Susan; Shen, Hua; et al.

2013

OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants

BMC Genomics, BioMed Central 2013, Vol. 14

Srivastava, Vaibhav; Obudulu, Ogonna; Bygdell, Joakim; et al.

2013

Cycles of light and dark co-ordinate reversible colony differentiation in Listeria monocytogenes

Molecular Microbiology, Vol. 87, (4) : 909-924

Tiensuu, Teresa; Andersson, Christopher; Ryden, Patrik; et al.

2012

Pr is a member of a restricted class of σ70-dependent promoters that lack a recognizable -10 element

Nucleic Acids Research, Vol. 40, (22) : 11308-11320

Del Peso-Santos, Teresa; Landfors, Mattias; Skärfstad, Eleonore; et al.

2012

Outbreaks of tularemia in a boreal forest region depends on mosquito prevalence

Journal of Infectious Diseases, Vol. 205, (2) : 297-304

Rydén, Patrik; Björk, Rafael; Schäfer, Martina L; et al.

2012

BALB/c mice, but not C57BL/6 mice immunized with a Delta clpB mutant of Francisella tularensis subspecies tularensis are protected against respiratory challenge with wild-type bacteria: Association of protection with post-vaccination and post-challenge immune responses

Vaccine, Vol. 30, (24) : 3634-3645

Twine, Susan; Shen, Hua; Harris, Gregory; et al.

2012

EGFR gene variants are associated with specific somatic aberrations in glioma

Neuro-Oncology, Vol. 14, (Suppl. 3) : 46-46

Wibom, Carl; Ghasimi, Soma; Van Loo, P.; et al.

2012

EGFR gene variants are associated with specific somatic aberrations in glioma

PLoS ONE, plosone.org 2012, Vol. 7, (12) : e47929-

Wibom, Carl; Ghasimi, Soma; Van Loo, Peter; et al.

2012

DNA-repair gene variants are associated with glioblastoma survival

Acta Oncologica, Informa Healthcare 2012, Vol. 51, (3) : 325-332

Wibom, Carl; Sjöström, Sara; Henriksson, Roger; et al.

2011

Elongator Complex Influences Telomeric Gene Silencing and DNA Damage Response by Its Role in Wobble Uridine tRNA Modification

PLoS genetics, Public Library of Science 2011, Vol. 7, (9) : e1002258-

Chen, Changchun; Huang, Bo; Eliasson, Mattias; et al.

2011

Persistence of cell-mediated immunity three decades after vaccination with the live vaccine strain of Francisella tularensis

European Journal of Immunology, Weinheim: Wiley-VCH Verlagsgesellschaft 2011, Vol. 41, (4) : 974-980

Eneslätt, Kjell; Rietz, Cecilia; Rydén, Patrik; et al.

2011

Normalization of high dimensional genomics data where the distribution of the altered variables is skewed

PLoS ONE, Vol. 6, (11) : e27942-

Landfors, Mattias; Philip, Philge; Rydén, Patrik; et al.

2011

miRNA analysis of formalin-fixed squamous cell carcinomas of the tongue is affected by age of the samples

International Journal of Oncology, Spandidos Publ. Ltd 2011, Vol. 38, (1) : 61-69

Rentoft, Matilda; Fahlén, Jessica; Coates, PJ; et al.

2011

Classification of microarrays: synergistic effects between normalization, gene selection and machine learning

BMC Bioinformatics, BioMed Central 2011, Vol. 12, (1)

Önskog, Jenny; Freyhult, Eva; Landfors, Mattias; et al.

2010

MicroRNA-microarray data analysis in the precence of FFPE storage time effects

Fahlén, Jessica; Rentoft, Matilda; Rydén, Patrik

2010

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering

BMC Bioinformatics, BioMed Central 2010, Vol. 11

Freyhult, Eva; Landfors, Mattias; Önskog, Jenny; et al.

2010

Molecular immune responses to aerosol challenge with Francisella tularensis in mice inoculated with live vaccine candidates of varying efficacy

PloS one, Vol. 5, (10) : e13349-

Shen, Hua; Harris, Gregory; Chen, Wangxue; et al.

2010

Directed screen of Francisella novicida virulence determinants using Drosophila melanogaster

Infection and Immunity, ASM International 2010, Vol. 78, (7) : 3118-3128

Åhlund, Monika K; Rydén, Patrik; Sjöstedt, Anders; et al.

2009

Bioinformatics strategies for cDNA-microarray data processing

Batch effects and noise in microarray experiments: sources and solutions, Wiley and Sons 2009 : 61-74

Fahlén, Jessica; Landfors, Mattias; Freyhult, Eva; et al.

2009

MC-normalization: a novel method for dye-normalization of two-channel microarray data

Statistical Applications in Genetics and Molecular Biology, Berkeley: The Berkeley Electronic Press (bepress) 2009, Vol. 8, (1) : 42-

Landfors, Mattias; Fahlén, Jessica; Rydén, Patrik

2009

Effects of climate change on tularemia disease activity in Sweden

Global Health Action, Vol. 2

Rydén, Patrik; Sjöstedt, Anders; Johansson, Anders

2009

Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster

PLoS Genetics, Vol. 5, (5)

Stenberg, Per; Lundberg, Lina E.; Johansson, Anna-Mia; et al.

2008

Drosophila melanogaster as a model for elucidating the pathogenicity of Francisella tularensis

Cellular Microbiology, Vol. 10, (6) : 1327-1338

Vonkavaara, Malin; Telepnev, Maxim V; Rydén, Patrik; et al.

2007

Gene array identification of Ipf1/Pdx1 -/- regulated genes in pancreatic progenitor cells.

BMC Developmental Biology, Vol. 7, (1) : 129-

Svensson, Per; Williams, Cecilia; Lundeberg, Joakim; et al.

2006

T A microarray analysis of the murine macrophage response to infection with Francisella tularensis LVS

Journal of Medical Microbiology, Vol. 55, (8) : 1023-1033

Andersson, Henrik; Hartmanova (Andersson), Blanka; Landfors, Mattias; et al.

2006

Transcriptional profiling of the peripheral blood response during tularemia.

Genes and Immunity, Vol. 7, (6) : 503-513

Andersson, Henrik; Hartmanova, Blanka; Bäck, Erik; et al.

2006

Transcriptional profiling of the host responses in mouse lungs following aerosol

Journal of Medical Microbiology, Vol. 55, (3) : 263-271

Andersson, Henrik; Hartmanova, Blanka; Kuolee, R.; et al.

2000

On Non-Parametric Estimation of Poission Point Processes Related to Failure Stresses of Fibres

Research report in mathematical statistics, 2000-1

Belyaev, Yu.K.; Rydén, Patrik

2000

Statistical analysis and simulation methods related to load-sharing models.

Umeå: Umeå University 2000

Rydén, Patrik

Visa publikationer i DiVA

Forskningsprojekt

1 oktober 2017 till 30 september 2022

Statistisk inlärning för automatiskt alarm och rotorsaksanalys vid målning av lastbilshytter

1 januari 2016 till 30 juni 2019

Final Inspection and Quality Analysis

Publicerad: 07 sep, 2018

Patrik Rydén