Johan Trygg

Professor i Kemometri med fokus på multivariat data analys, AI/djup inlärning och simulering inom life science, medicin och läkemedelsindustri.

Kontakt

johan.trygg@umu.se

090-786 69 17, 0730-64 71 37

Verksam vid

Professor vid Kemiska institutionen

KB.B4, Linnaeus väg 10, (rum: C4.13.19) Umeå universitet, 901 87 Umeå

A machine learning framework to improve effluent quality control in wastewater treatment plants

Science of the Total Environment, Elsevier 2021, Vol. 784

Wang, Dong; Thunéll, Sven; Lindberg, Ulrika; et al.

A robust and precise convnet for small non-coding rna classification (rpc-snrc)

IEEE Access, Vol. 9 : 19379-19390

Asim, Muhammad Nabeel; Malik, Muhammad Imran; Zehe, Christoph; et al.

LIVECell: A large-scale dataset for label-free live cell segmentation

Nature Methods

Edlund, Christoffer; Jackson, Timothy R.; Khalid, Nabeel; et al.

Multiblock variable influence on orthogonal projections (MB-VIOP) for enhanced interpretation of total, global, local and unique variations in OnPLS models

BMC Bioinformatics, BioMed Central 2021, Vol. 22, (1)

Galindo-Prieto, Beatriz; Geladi, Paul; Trygg, Johan

Out-of-Distribution Example Detection in Deep Neural Networks using Distance to Modelled Embedding

Sjögren, Rickard; Trygg, Johan

Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees

Biotechnology for Biofuels, BioMed Central 2021, Vol. 14, (1)

Gandla, Madhavi Latha; Mähler, Niklas; Escamez, Sacha; et al.

Statistical analysis in metabolic phenotyping

Nature Protocols

Blaise, Benjamin J.; Correia, Gonçalo D. S.; Haggart, Gordon A.; et al.

A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences

PLOS ONE, Public Library Science 2020, Vol. 15, (9)

Svensson, Daniel; Rentoft, Matilda; Dahlin, Anna M.; et al.

Application of multiblock analysis on a small metabolomic multi-tissue dataset

Metabolites, MDPI 2020, Vol. 10, (7)

Torell, Frida; Skotare, Tomas; Trygg, Johan

MirLocPredictor: A ConvNet-Based Multi-Label MicroRNA Subcellular Localization Predictor by Incorporating k-Mer Positional Information

Genes, MDPI 2020, Vol. 11, (12)

Asim, Muhammad Nabeel; Malik, Muhammad Imran; Zehe, Christoph; et al.

Multivariate patent analysis: using chemometrics to analyze collections of chemical and pharmaceutical patents

Journal of Chemometrics, John Wiley & Sons 2020, Vol. 34, (1)

Sjögren, Rickard; Stridh, Kjell; Skotare, Tomas; et al.

Overexpression of VviPGIP1 and NtCAD14 in Tobacco Screened Using Glycan Microarrays Reveals Cell Wall Reorganisation in the Absence of Fungal Infection

Vaccines, MDPI 2020, Vol. 8, (3)

Weiller, Florent; Gerber, Lorenz; Trygg, Johan; et al.

Subspace Based Model Identification for an Industrial Bioreactor: Handling Infrequent Sampling Using Missing Data Algorithms

Processes, MDPI 2020, Vol. 8, (12)

Patel, Nikesh; Corbett, Brandon; Trygg, Johan; et al.

Visualization of descriptive multiblock analysis

Journal of Chemometrics, John Wiley & Sons 2020, Vol. 34, (1)

Skotare, Tomas; Sjögren, Rickard; Surowiec, Izabella; et al.

A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis

PLOS ONE, Public Library of Science 2019, Vol. 14, (3)

Rentoft, Matilda; Svensson, Daniel; Sjödin, Andreas; et al.

Cytokine Profiles in Autoantibody Defined Subgroups of Systemic Lupus Erythematosus

Journal of Proteome Research, American Chemical Society (ACS) 2019, Vol. 18, (3) : 1208-1217

Torell, Frida; Eketjäll, Susanna; Idborg, Helena; et al.

doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows

BMC Bioinformatics, BioMed Central 2019, Vol. 20, (1)

Svensson, Daniel; Sjögren, Rickard; Sundell, David; et al.

Joint and unique multiblock analysis for integration and calibration transfer of NIR instruments

Analytical Chemistry, Washington: American Chemical Society (ACS) 2019, Vol. 91, (5) : 3516-3524

Skotare, Tomas; Nilsson, David; Xiong, Shaojun; et al.

Joint and unique multiblock analysis of biological data: multiomics malaria study

Faraday discussions (Online), Cambridge: Royal Society of Chemistry 2019, Vol. 218 : 268-283

Surowiec, Izabella; Skotare, Tomas; Sjögren, Rickard; et al.

Metabolic profiling of zebrafish embryo development from blastula period to early larval stages

PLOS ONE, San Francisco: Public Library of Science 2019, Vol. 14, (5)

Dhillon, Sundeep S.; Torell, Frida; Donten, Magdalena; et al.

Ultrasound imaging of dorsal neck muscles with speckle tracking analyses: the relationship between muscle deformation and force

Scientific Reports, Nature Publishing Group 2019, Vol. 9

Peterson, Gunnel; O'Leary, Shaun; Nilsson, David; et al.

A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees

BMC Genomics, Springer Publishing Company 2018, Vol. 19

Obudulu, Ogonna; Mähler, Niklas; Skotare, Tomas; et al.

Alterations in the Mechanical Response of Deep Dorsal Neck Muscles in Individuals Experiencing Whiplash-Associated Disorders Compared to Healthy Controls: An Ultrasound Study

American Journal of Physical Medicine & Rehabilitation, LIPPINCOTT WILLIAMS & WILKINS 2018, Vol. 97, (2) : 75-82

Rahnama, Leila; Peterson, Gunnel; Kazemnejad, Anoshirvan; et al.

Kynurenine pathway is altered in patients with SLE and associated with severe fatigue

Lupus Science and Medicine, BMJ Publishing Group Ltd 2018, Vol. 5, (1)

Åkesson, Karolina; Pettersson, Susanne; Stahl, Sara; et al.

Metabolic Profiling of Multiorgan Samples: Evaluation of MODY5/RCAD Mutant Mice

Journal of Proteome Research, American Chemical Society (ACS) 2018, Vol. 17, (7) : 2293-2306

Torell, Frida; Bennet, Kate; Cereghini, Silvia; et al.

Neck-specific exercise improves impaired interactions between ventral neck muscles in chronic whiplash: A randomized controlled ultrasound study

Scientific Reports, Nature Publishing Group 2018, Vol. 8

Peterson, Gunnel; Nilsson, David; Trygg, Johan; et al.

OnPLS-Based Multi-Block Data Integration: A Multivariate Approach to Interrogating Biological Interactions in Asthma

Analytical Chemistry, AMER CHEMICAL SOC 2018, Vol. 90, (22) : 13400-13408

Reinke, Stacey N.; Galindo-Prieto, Beatriz; Skotare, Tomas; et al.

Quantification of run order effect on chromatography: mass spectrometry profiling data

Journal of Chromatography A, Vol. 1568 : 229-234

Surowiec, Izabella; Johansson, Erik; Stenlund, Hans; et al.

A new approach for variable influence on projection (VIP) in O2PLS models

Chemometrics and Intelligent Laboratory Systems, Elsevier 2017, Vol. 160 : 110-124

Galindo-Prieto, Beatriz; Trygg, Johan; Geladi, Paul

Association between pathology and texture features of multi parametric MRI of the prostate

Physics in Medicine and Biology, Vol. 62, (19) : 7833-7854

Kuess, Peter; Andrzejewski, Piotr; Nilsson, David; et al.

Dysregulations in circulating sphingolipids associate with disease activity indices in female patients with systemic lupus erythematosus: a cross-sectional study

Lupus, SAGE PUBLICATIONS LTD 2017, Vol. 26, (10) : 1023-1033

Checa, A.; Idborg, H.; Zandian, A.; et al.

Generalized Subset Designs in Analytical Chemistry

Analytical Chemistry, American Chemical Society (ACS) 2017, Vol. 89, (12) : 6491-6497

Surowiec, Izabella; Vikström, Ludvig; Hector, Gustaf; et al.

Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters

Scientific Reports, Nature Publishing Group 2017, Vol. 7

Brynolfsson, Patrik; Nilsson, David; Torheim, Turid; et al.

Lipid response patterns in acute phase paediatric Plasmodium falciparum malaria

Metabolomics, Vol. 13, (4)

Orikiiriza, Judy; Surowiec, Izabella; Lindquist, Elisabeth; et al.

Multivariate strategy for the sample selection and integration of multi-batch data in metabolomics

Metabolomics, SPRINGER 2017, Vol. 13, (10)

Surowiec, Izabella; Johansson, Erik; Torell, Frida; et al.

Protein expression in tension wood formation monitored at high tissue resolution in Populus

Journal of Experimental Botany, Oxford University Press 2017, Vol. 68, (13) : 3405-3417

Bygdell, Joakim; Srivastava, Vaibhav; Obudulu, Ogonna; et al.

The effects of thawing on the plasma metabolome: evaluating differences between thawed plasma and multi-organ samples

Metabolomics, Springer 2017, Vol. 13, (6)

Torell, Frida; Bennett, Kate; Rännar, Stefan; et al.

The oxylipin and endocannabidome responses in acute phase Plasmodium falciparum malaria in children

Malaria Journal, BIOMED CENTRAL LTD 2017, Vol. 16

Surowiec, Izabella; Gouveia-Figueira, Sandra; Orikiiriza, Judy; et al.

Altered mechanical deformation of the trapezius and multifidus muscles registered with ultrasonography in women with chronic whiplash-associated disorders

Manual Therapy, Vol. 25 : e58-

Peolsson, A.; Peterson, G.; Trygg, Johan; et al.

Changes in dorsal neck muscle function in individuals with chronic whiplash-associated disorders: a real-time ultrasound case-control study

Ultrasound in Medicine and Biology, Vol. 42, (5) : 1090-1102

Peterson, Gunnel; Nilsson, David; Peterson, Simon; et al.

Chemometric Analysis of Bacterial Peptidoglycan Reveals Atypical Modifications That Empower the Cell Wall against Predatory Enzymes and Fly Innate Immunity

Journal of the American Chemical Society, American Chemical Society (ACS) 2016, Vol. 138, (29) : 9193-9204

Espaillat, Akbar; Forsmo, Oskar; El Biari, Khouzaima; et al.

Heterozygous colon cancer-associated mutations of SAMHD1 have functional significance

Proceedings of the National Academy of Sciences of the United States of America, Vol. 113, (17) : 4723-4728

Rentoft, Matilda; Lindell, Kristoffer; Tran, Phong; et al.

Mechanical properties of the trapezius during scapular elevation in people with chronic whiplash associated disorders: A case-control ultrasound speckle tracking analysis

Manual Therapy, Vol. 21 : 177-182

Landén Ludvigsson, Maria; Peterson, Gunnel; Jull, Gwendolen; et al.

Metabolic Profiling of Systemic Lupus Erythematosus and Comparison with Primary Sjögren’s Syndrome and Systemic Sclerosis

PLOS ONE, Vol. 11, (7)

Bengtsson, Anders A.; Trygg, Johan; Wuttge, Dirk M.; et al.

Metabolite and Lipid Profiling of Biobank Plasma Samples Collected Prior to Onset of Rheumatoid Arthritis

PLOS ONE, Vol. 11, (10)

Surowiec, Izabella; Ärlestig, Lisbeth; Rantapää-Dahlqvist, Solbritt; et al.

Metabolomics study of fatigue in patients with rheumatoid arthritis na < ve to biological treatment

Rheumatology International, Vol. 36, (5) : 703-711

Surowiec, Izabella; Gjesdal, Clara Gram; Jonsson, Grete; et al.

Multi-platform metabolomics assays for human lung lavage fluids in an air pollution exposure study

Analytical and Bioanalytical Chemistry, Vol. 408, (17) : 4751-4764

Surowiec, Izabella; Karimpour, Masoumeh; Gouveia-Figueira, Sandra; et al.

Multivariate analysis of ultrasound-recorded dorsal strain sequences: Investigation of dynamic neck extensions in women with chronic whiplash associated disorders

Scientific Reports, Vol. 6

Peolsson, Anneli; Peterson, Gunnel; Trygg, Johan; et al.

Postprandial metabolomics: A pilot mass spectrometry and NMR study of the human plasma metabolome in response to a challenge meal

Analytica Chimica Acta, Elsevier: 2016, Vol. 908 : 121-131

Karimpour, Masoumeh; Surowiec, Izabella; Wu, Junfang; et al.

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development

BMC Genomics, Vol. 17

Obudulu, Ogonna; Bygdell, Joakim; Sundberg, Bjorn; et al.

Visa publikationer i DiVA

Forskargrupper

Forskningsledare

Johan Trygg Lab

Publicerad: 14 sep, 2021

1,6 miljoner celler förbättrar AI-tolkning av mikroskopibilder